| Madarsa Darul Uloom Hizbul Irfan Faiz Saiyad Shah Mardan Bachal Khan ki Dhani Bandha | SAM | Primary | 42 | 21.0:1 |
| Madarsa Feje Sikandariya Shikshan Sansthan Rehrund Fulasar | MOHANGARH | Primary | 42 | 42.0:1 |
| PS Maa Sarswati Siksan Sanstan | MOHANGARH | Primary | 42 | 14.0:1 |
| PS Pokran Public School | POKARAN | Pr. Up Pr. and Secondary Only | 42 | 5.3:1 |
| R.S. Public School, Indira Colony, Jaisalmer | JAISALMER | Primary with Upper Primary | 42 | 7.0:1 |
| UPS S.V.M.Sanskar Public School Pokaran | POKARAN | Primary with Upper Primary | 42 | 6.0:1 |
| Govt. Ps_aalam ka Gawe | SAM | Primary | 41 | 20.5:1 |
| Govt. Ps_menuvo ki Basti | SAM | Primary | 41 | 20.5:1 |
| Govt. Ps_sunder Nagar | POKARAN | Primary | 41 | 13.7:1 |
| Madarsa Faizane Madina Shikshan Sansthan Digri Chelak | FATHEGARH | Primary | 41 | 41.0:1 |
| SHRI Ashapura Upper Primary School Nedan (Jaisalmer) | POKARAN | Primary with Upper Primary | 41 | 20.5:1 |
| Govt Girls Ups_looharon ka Was | JAISALMER | Primary with Upper Primary | 40 | 40.0:1 |
| Govt. Primary School Ganeshpura Bhurjgarh | BHANIYANA | Primary | 40 | 20.0:1 |
| Govt. PS Bhilo ki Dhani | JAISALMER | Primary | 40 | 40.0:1 |
| Govt. PS Usmanabad | POKARAN | Primary | 40 | 20.0:1 |
| Govt. Ups_gunjngedh | SAM | Primary with Upper Primary | 40 | 8.0:1 |
| Govt.Ps_dunger ki Dhani | FATHEGARH | Primary | 40 | 20.0:1 |
| Madarsa Ahle Sunnat Rijviya Shikshan Sansthan Piru Khan ki Dhani Chhor | JAISALMER | Primary | 40 | 20.0:1 |
| Madarsa Faijul Quran Education and Welfare Trust Indranagar | POKARAN | Primary | 40 | 20.0:1 |
| Madrasa Madni UPS Pokaran | POKARAN | Primary with Upper Primary | 40 | 40.0:1 |
| UPS Jaisalmer Visesh Yogya Jan School R.P. Colony Jaisalmer | JAISALMER | Primary with Upper Primary | 40 | 10.0:1 |
| Govt Ps_megawalon ki Dhani | BHANIYANA | Primary | 39 | 19.5:1 |
| Govt. PS Deenu Khan ki Dhani Sanawra | POKARAN | Primary | 39 | 19.5:1 |
| Govt. PS Dhaulasar | BHANIYANA | Primary | 39 | 19.5:1 |
| Govt. PS Gandhi Khan ki Dhani Pannasar | BHANIYANA | Primary | 39 | 19.5:1 |
| Govt. PS Uttam Singh ki Dhani | BHANIYANA | Primary | 39 | 19.5:1 |
| Govt. Ps_bhambaro ki Dhani | SAM | Primary | 39 | 19.5:1 |
| Govt. Ps_chohani | SAM | Primary | 39 | 19.5:1 |
| Govt.Ps_jamaniyo ki Dhani | POKARAN | Primary | 39 | 19.5:1 |
| Govt.Ps_ramjaniyo ki Dhani | BHANIYANA | Primary | 39 | 13.0:1 |
| Madarsa DR. Apj Abdul Kalam Azad Sikshan Sansthan Jaitpura Kajoi | BHANIYANA | Primary | 39 | 13.0:1 |
| Madarsa Fajle Hak_musalmano ka Bass Chacha | POKARAN | Primary | 39 | 19.5:1 |
| Govt Primary School Dudiyon ki Dhani | BHANIYANA | Primary | 38 | 19.0:1 |
| Govt PS_4MTD Satyaya | NACHANA | Primary | 38 | 19.0:1 |
| Govt. PS Janaram Bheel ki Dhani Pabnasar | FATHEGARH | Primary | 38 | 19.0:1 |
| Govt. PS_ Dhananiyo ki Dhani | FATHEGARH | Primary | 38 | 19.0:1 |
| Govt. Ps_bage ki Dhani | SAM | Primary | 38 | 19.0:1 |
| Govt. Ps_birmath ki Dhani | POKARAN | Primary | 38 | 19.0:1 |
| Govt. Ps_pire ki Dhani | FATHEGARH | Primary | 38 | 19.0:1 |
| Govt. UPS Samad Hingolo ki Dhani Ramgarh | SAM | Primary with Upper Primary | 38 | 12.7:1 |
| Govt.Ps_matujo ki Dhani | POKARAN | Primary | 38 | 19.0:1 |
| Govt.Ps_neembri Pana-1 | BHANIYANA | Primary | 38 | 19.0:1 |
| Madarsa Faize Jilani Shikshan Sansthan Juneju ki Basti Longasar Dhaulasar | BHANIYANA | Primary | 38 | 38.0:1 |
| MGGS Derjiyon ka Was | FATHEGARH | Pr. with Up.Pr. Sec. and H.Sec. | 38 | 7.6:1 |
| PS Swami Vivekanand | JAISALMER | Primary | 38 | 6.3:1 |
| UPS Emmanuel Mission School | SAM | Primary with Upper Primary | 38 | 5.4:1 |
| UPS Neharu Bal Mandir | JAISALMER | Primary with Upper Primary | 38 | 7.6:1 |
| Govt. Primary School Baganiyo ki Dhani | BHANIYANA | Primary | 37 | 18.5:1 |
| Govt. PS 2 DJM 8DD | MOHANGARH | Primary | 37 | 18.5:1 |
| Govt. PS Khanpura | MOHANGARH | Primary | 37 | 18.5:1 |
| Govt. PS Khatpalo ki Than | POKARAN | Primary | 37 | 18.5:1 |
| Govt. PS Nainu Khan ki Dhani Teliwara | BHANIYANA | Primary | 37 | 18.5:1 |
| Govt. PS_ Changaniyo ki Basti | SAM | Primary | 37 | 12.3:1 |
| Govt. PS_7 DD Pirasar | MOHANGARH | Primary | 37 | 18.5:1 |
| Govt. Ps_lale ki Basti | SAM | Primary | 37 | 18.5:1 |
| Govt. Ups_koda | FATHEGARH | Primary with Upper Primary | 37 | 7.4:1 |
| Govt.Ps_amanaram Meg. ki Dhani | POKARAN | Primary | 37 | 18.5:1 |
| Mahatma Gandhi Govt. School (English Medium) Moolana | FATHEGARH | Pr. with Up.Pr. Sec. and H.Sec. | 37 | 9.3:1 |
| Govt. Girls Ups_dangari | FATHEGARH | Primary with Upper Primary | 36 | 7.2:1 |
| Govt. PS Kalo ka Bas Gomat | POKARAN | Primary | 36 | 18.0:1 |